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Regulatory Roles of KLF3 in Hematopoiesis of K562 Leukemia Cells

Qian Zhang, Nan Ding, Qian Xiong, Jiawen Zheng, Zexia Li, Yajuan Li, Quanzhen Li, Xiangdong Fang and Zhaojun Zhang

Objective: KLF3 (Krüppel-like factor 3) is involved in the differentiation and development of a wide range of cell lineages. However, the regulatory roles of KLF3 in hematopoiesis of K562 leukemia cells remain largely unknown.
Methods: The public gene expression databases that represent the heterogeneity of acute myeloid leukemia (AML) and acute lymphoblastic leukemia (ALL) disease were downloaded from GEO datasets in NCBI. KLF3-deficient K562 stable cells were established and microarray datasets were analyzed. Gene Ontology (GO) analysis was used to identify the affected hematopoiesis-associated genes in KLF3-deficient K562 cells. Ingenuity Pathways Analysis (IPA) was used to identify the affected hematopoiesis-associated functions, interaction networks, pathways and the upstream regulators involving differentially expressed genes (DEGs). KLF3-deficient K562 cells were respectively induced towards erythrocytes and megakaryocytes with hemin and PMA, and phenotypic analyses were performed. We also utilized qPCR technique to analyze KLF3 expression during erythroid and megakaryocyte differentiation of K562 cells.
Results: We report that KLF3 is aberrantly expressed at low levels in primary acute leukemia blast cells from patients that are associated with the accumulation of immature myeloid or lymphoid phenotypes of leukemia cells. The bioinformatics analyses reveal that KLF3 is closely involved in hematopoiesis-associated functions in K562 leukemia cells, and potentially regulates hematopoiesis of different blood cell lineages, including erythrocytes and megakaryocytes. KLF3 is probably associated with the pathology of hematological diseases. Finally, the functional analysis demonstrated that KLF3 deficiency accelerates K562 leukemia cells towards erythroid and megakaryocyte differentiation, and is indispensable for the early stage of hematopoiesis in K562 leukemia cells. We also proposed the potential mechanisms that KLF3 regulates hematopoiesis in K562 cells.
Conclusion: Our results first reveal that KLF3 regulates erythroid and megakaryocyte differentiation of K562 leukemia cells, and KLF3 deficiency is indispensible for the early stage of erythroid and megakaryocyte differentiation in K562 leukemia cells.